Question: Finding a corresponding set of specific-tissue eQTLs for a list of known SNPs
0
gravatar for spela.salamon
4 months ago by
spela.salamon0 wrote:

Greetings,

I was wondering how it would be best to go about this in practice. I have a set of known SNPs with GWAs associations above the significance threshold of 10-8 (summary statistics). I would like to link these SNPs with corresponding eQTLs in specific tissues. I am vaguely familiar with the coloc package for R, but without a good example of this type of task. Are there any other good tools out there to do this, and if you have done something similar, what did you use? Thank you in advance!

snp eqtl R genome • 151 views
ADD COMMENTlink modified 4 months ago by Biostar ♦♦ 20 • written 4 months ago by spela.salamon0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1749 users visited in the last hour