How to get a VCF file for all variants in a specific gene and specific exon?

Question

[natarajan.padmaja]

How to get a VCF file for all variants (single nucleotide variants, insertions/deletions, copy number variants and structural variants) from reference genome (e.g. GRCh38) for a specific gene (e.g. BRCA1) and in specific exon (e.g. 10) ?

Thanks.

Answer 1

[DNAngel]

Have you figured this out? I am also interested!