Question: Affymetrix probesets to Gene symbols
0
gravatar for mannoulag1
7 months ago by
mannoulag160
mannoulag160 wrote:

Hi I have a expression data matrix 'mat' and I would like to replace the affymetrix probes with the gene symbols. I did this code:

library(hgu95av2.db) 
    x <- hgu95av2SYMBOL
    # Get the probe identifiers that are mapped to a gene symbol
    mapped_probes <- mappedkeys(x)
    xx <- as.list(x[mapped_probes])
    names <-merge(x,mat,by.x=1,by.y=0)

but how can I obtain the data matrix with only the symbols? with the code I obtained a lower size data matrix 'names' with the affy probes id and the symboles? how to remove the probes id from this matrix? thank you

rna-seq R gene • 215 views
ADD COMMENTlink modified 7 months ago • written 7 months ago by mannoulag160
1
gravatar for patelk26
7 months ago by
patelk26120
patelk26120 wrote:

You can find your answer here: Annotate Affymetrix probesets to Gene symbols

ADD COMMENTlink modified 7 months ago • written 7 months ago by patelk26120

I will try it, thank you, I edit the question

ADD REPLYlink modified 7 months ago • written 7 months ago by mannoulag160
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