Best software to visualize a phylogenetic tree coupled to the presence/absence pattern of clusters of orthologous proteins (COGs)

Question

[Biok]

Hi everyone,

I am looking for a good comparative genomic tool or R package where it is possible to have a phylogenetic tree on one side and the distribution of COGs across the species on the other. Do you know of a program for this?

Thank you!

[Asaf]

The best tool is iTOL, unfortunately it's web-based, I couldn't find a standalone software that comes near.

[Biok]

Thank you for the recommendation! I will try iTOL.