Unable to install Jbrowse setup in xampp on centos
1
0
Entering edit mode
2.6 years ago
vivek37373 • 0

I've been trying to install jbrowse setup in xampp setup with Centos. Though installation is successful if run in /var/www/html, it fails in /opt/lampp/htdocs/mywebsite/jbrowse. Major issue call out as absence of selective perl modules. For instance,

Configuring Bio-FeatureIO-1.6.905 ... Warning: prerequisite Bio::AnnotatableI 0 not found. Warning: prerequisite Bio::Annotation::Collection 0 not found. Warning: prerequisite Bio::Annotation::Comment 0 not found. Warning: prerequisite Bio::Annotation::DBLink 0 not found. Warning: prerequisite Bio::Annotation::OntologyTerm 0 not found. Warning: prerequisite Bio::Annotation::SimpleValue 0 not found. Warning: prerequisite Bio::Annotation::Target 0 not found. Warning: prerequisite Bio::FeatureHolderI 0 not found. Warning: prerequisite Bio::LocatableSeq 0 not found. Warning: prerequisite Bio::Location::Simple 0 not found. Warning: prerequisite Bio::Ontology::OntologyStore 0 not found. Warning: prerequisite Bio::OntologyIO 0 not found. Warning: prerequisite Bio::Root::IO 0 not found. Warning: prerequisite Bio::Root::Root 0 not found. Warning: prerequisite Bio::Root::Test 0 not found. Warning: prerequisite Bio::SeqFeature::AnnotationAdaptor 0 not found. Warning: prerequisite Bio::SeqFeature::Generic 0 not found. Warning: prerequisite Bio::SeqFeature::TypedSeqFeatureI 0 not found. Warning: prerequisite Bio::SeqIO 0 not found. Warning: prerequisite Bio::Tools::GFF 0 not found.

Any suggestions on how to solve this problem would be appreciated.

browser perl xampp jbrowse • 659 views
ADD COMMENT
0
Entering edit mode

What about installing those modules? i.e. http://www.cpan.org/modules/INSTALL.html

ADD REPLY
0
Entering edit mode
2.6 years ago
scott ▴ 70

Can you add a little bit about what you did during the installation or provide error messages from setup.log? It is a little surprising that it would install successfully in one place and not another.

In addition, I'm not sure it matters that much if it installed successfully in one place; you can just use a symlink to "place it" where you want it to be.

ADD COMMENT

Login before adding your answer.

Traffic: 2586 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6