Job: DADA2/R Programmer Needed for One-Time Job
gravatar for espop23
11 months ago by
espop2360 wrote:

Need an experienced R-programmer, with experience with DADA-2 and optimising pipelines for biological data.

Have a pipeline that is not delivering to species-level as desired. Need script to be refined to ensure high accuracy, precision, and greater detection.

You much have experience with microbiome data.

Fee: negotiable.

Start time: ASAP.

microbiome job dada2 R • 294 views
ADD COMMENTlink written 11 months ago by espop2360

I know this is a job tread but still want to share that in my experience if you can not identify on species level it has much more to do with the sample itself and the used reference then the actual pipeline.

Edit: to test your pipeline for the species identification part you can also just blast all the reads. And compare it to the blasted clusters. It takes time but saves you money

ADD REPLYlink modified 11 months ago • written 11 months ago by gb1.9k

True. I had this problem with a microbial community rich in enterobacteriace.

ADD REPLYlink written 11 months ago by andres.firrincieli880

Hi, I am very happy to help you. May u leave your email?

ADD REPLYlink written 11 months ago by shangzhenhua080
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