Job: DADA2/R Programmer Needed for One-Time Job
0
gravatar for espop23
4 weeks ago by
espop2360
London
espop2360 wrote:

Need an experienced R-programmer, with experience with DADA-2 and optimising pipelines for biological data.

Have a pipeline that is not delivering to species-level as desired. Need script to be refined to ensure high accuracy, precision, and greater detection.

You much have experience with microbiome data.

Fee: negotiable.

Start time: ASAP.

microbiome job dada2 R • 168 views
ADD COMMENTlink written 4 weeks ago by espop2360
1

I know this is a job tread but still want to share that in my experience if you can not identify on species level it has much more to do with the sample itself and the used reference then the actual pipeline.

Edit: to test your pipeline for the species identification part you can also just blast all the reads. And compare it to the blasted clusters. It takes time but saves you money

ADD REPLYlink modified 4 weeks ago • written 4 weeks ago by gb1.2k

True. I had this problem with a microbial community rich in enterobacteriace.

ADD REPLYlink written 4 weeks ago by andres.firrincieli190

Hi, I am very happy to help you. May u leave your email?

ADD REPLYlink written 4 weeks ago by shangzhenhua080
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1781 users visited in the last hour