Entering edit mode
3.6 years ago
espop23 ▴ 60
Need an experienced R-programmer, with experience with DADA-2 and optimising pipelines for biological data.
Have a pipeline that is not delivering to species-level as desired. Need script to be refined to ensure high accuracy, precision, and greater detection.
You much have experience with microbiome data.
Start time: ASAP.
I know this is a job tread but still want to share that in my experience if you can not identify on species level it has much more to do with the sample itself and the used reference then the actual pipeline.
Edit: to test your pipeline for the species identification part you can also just blast all the reads. And compare it to the blasted clusters. It takes time but saves you money
True. I had this problem with a microbial community rich in enterobacteriace.
Hi, I am very happy to help you. May u leave your email?