Genome tracks, Genome viewer, Genome Track Data

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4.5 years ago

sc@791 ▴ 30

Hi!

I am looking for best tool represent different format files into single genome track file. I am working on Arabidopsis and I want to show methylation and nucleosome data on superimposing on genome coordinates. I have files in BigWig, Bed and BAM format.

Any help is much appreciated.

Thank you!

genome • 845 views

ADD COMMENT • link updated 10 months ago by Ram 43k • written 4.5 years ago by sc@791 ▴ 30

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IGV. If you want a more elaborate answer please add details on how you plan to present these data.

ADD REPLY • link 4.5 years ago by ATpoint 82k

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Thank you! for your reply. I want to plot chromosome wise Differential methylation regions, Differential Nucleosome positions, and Splice Junctions all together against reference genome. I have all files in BED format.

Thank you! Best

ADD REPLY • link 4.5 years ago by sc@791 ▴ 30

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GenomeView, which (in contrast to IGV) allows editing as well.

ADD REPLY • link 4.5 years ago by lieven.sterck 15k

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