Question

Correlation matrix from deseq2 results

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4.5 years ago

sg927357 ▴ 20

Hi everyone, i want to build a correlation matrix from deseq2 output and i do not understand how to build it.

RNA-Seq • 3.8k views

ADD COMMENT • link updated 3.6 years ago by jocelyn.petitto ▴ 20 • written 4.5 years ago by sg927357 ▴ 20

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ADD REPLY • link 4.5 years ago by GenoMax 141k

score 0 · Answer 1 · 2019-10-19

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4.5 years ago

Arindam Ghosh ▴ 510

Refer to Step-by-Step Construction of Gene Co-expression Networks from High-Throughput Arabidopsis RNA Sequencing Data. The section 3.12 Calculating Correlation of Gene Expression for Every Pair of Genes explains the steps.

ADD COMMENT • link 4.5 years ago by Arindam Ghosh ▴ 510

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Is there a version of EBSeq that works for R v4? Or something that has a similar function? I tried to use the pipeline and cannot.

ADD REPLY • link 3.6 years ago by jocelyn.petitto ▴ 20