Hello everyone, I hope all of you are fine. I am working on reference-based transcriptome data analysis. I have done with genome assembly using HISAT2 and Stringtie and got the gtf file (annotation file). Now I want to find one gene and its homologs in the entire transcriptome. Kindly suggest me how can I find them. I shall be very thankful to all of you.
Regards, Zunera Khalid