Question: Creation of a correlation heatmap between samples
0
gravatar for SeaStar
11 months ago by
SeaStar30
Ocean
SeaStar30 wrote:

I have two samples with different degree of expression in tissues.

s1
     name    tis1    tis2    tis3     tis4    tis5     tis6    tis7    tis8     tis9    tis10      tis11    tis12
    S1       0       0       0       12.1    29.2      1.9    0.45     0.2     17.0    0.4        0.7      0.1


s2            
        name    tis1    tis2    tis3     tis4    tis5     tis6    tis7    tis8     tis9    tis10      tis11    tis12
        S2       1       2       0.4       14.1    9.2      1.8    0.7     0.9     7.0    0.3        0.7      0.3

I would to plot them with a heatmap. How can I set the parameters?

R gene • 234 views
ADD COMMENTlink modified 11 months ago • written 11 months ago by SeaStar30

You have not explained very well what you wan to do. Please be very specific. Take a look at levelplot (in R), as it may be what you want. I have an implementation of levelplot here, too: https://github.com/kevinblighe/CorLevelPlot

ADD REPLYlink written 11 months ago by Kevin Blighe65k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 816 users visited in the last hour