Question: Creation of a correlation heatmap between samples
0
gravatar for SeaStar
4 weeks ago by
SeaStar20
Ocean
SeaStar20 wrote:

I have two samples with different degree of expression in tissues.

s1
     name    tis1    tis2    tis3     tis4    tis5     tis6    tis7    tis8     tis9    tis10      tis11    tis12
    S1       0       0       0       12.1    29.2      1.9    0.45     0.2     17.0    0.4        0.7      0.1


s2            
        name    tis1    tis2    tis3     tis4    tis5     tis6    tis7    tis8     tis9    tis10      tis11    tis12
        S2       1       2       0.4       14.1    9.2      1.8    0.7     0.9     7.0    0.3        0.7      0.3

I would to plot them with a heatmap. How can I set the parameters?

R gene • 99 views
ADD COMMENTlink modified 4 weeks ago • written 4 weeks ago by SeaStar20

You have not explained very well what you wan to do. Please be very specific. Take a look at levelplot (in R), as it may be what you want. I have an implementation of levelplot here, too: https://github.com/kevinblighe/CorLevelPlot

ADD REPLYlink written 4 weeks ago by Kevin Blighe51k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1398 users visited in the last hour