Creation of a correlation heatmap between samples
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3.4 years ago
SeaStar ▴ 50

I have two samples with different degree of expression in tissues.

s1
name    tis1    tis2    tis3     tis4    tis5     tis6    tis7    tis8     tis9    tis10      tis11    tis12
S1       0       0       0       12.1    29.2      1.9    0.45     0.2     17.0    0.4        0.7      0.1

s2
name    tis1    tis2    tis3     tis4    tis5     tis6    tis7    tis8     tis9    tis10      tis11    tis12
S2       1       2       0.4       14.1    9.2      1.8    0.7     0.9     7.0    0.3        0.7      0.3


I would to plot them with a heatmap. How can I set the parameters?

R gene • 517 views
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You have not explained very well what you wan to do. Please be very specific. Take a look at levelplot (in R), as it may be what you want. I have an implementation of levelplot here, too: https://github.com/kevinblighe/CorLevelPlot