Question: Haplotype phasing and imputation in Beagle 5.1
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13 months ago by
kas0 wrote:

Dear members, Anybody elaborate on the steps for haplotype phasing and imputation in Beagle v5.1. I have plink format files (.ped and .map) and I tried the older version of Beagle (v3.3). It gives .phased as output. But I need .hap output files to use this as input for rehh package. Beagle v5.1 needs plink map file with cM units. But my map file is having only base pair positions. How to convert bp to cM units. Please help me to proceed further.

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