Question: Tool for CNV benchmarking vs gold standards
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gravatar for eric54321g
29 days ago by
eric54321g0
eric54321g0 wrote:

Is there a tool (analogous to Truvari for SVs) that can be used for CNV accuracy assessment, given some gold standard samples. It should ideally output precision and recall for different CNV types and size ranges.

cnv • 84 views
ADD COMMENTlink modified 29 days ago • written 29 days ago by eric54321g0

Does Truvari not do the job here?

ADD REPLYlink written 29 days ago by WouterDeCoster42k

I read through the Truvari docs, and CNV isn't mentioned. Do you know if it can handle numeric gains and losses in some manner?

ADD REPLYlink written 29 days ago by eric54321g0

Please use ADD COMMENT or ADD REPLY to answer to previous reactions, as such this thread remains logically structured and easy to follow. I have now moved your reaction but as you can see it's not optimal. Adding an answer should only be used for providing a solution to the question asked.

Isn't a CNV an SV then?

ADD REPLYlink written 29 days ago by WouterDeCoster42k
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