Question: padj in DEseq2
0
gravatar for mxlsherry1992
25 days ago by
mxlsherry199230 wrote:

Hi all, if you know the full name of padj in DESeq2? I know if it corrected p-value, but It should be the abbreviation, so if you know the full name for that?

rna-seq • 110 views
ADD COMMENTlink modified 25 days ago by Brice Sarver3.2k • written 25 days ago by mxlsherry199230
3
gravatar for ATpoint
25 days ago by
ATpoint25k
Germany
ATpoint25k wrote:

adjusted pvalue means corrected for multiple testing.

ADD COMMENTlink modified 25 days ago • written 25 days ago by ATpoint25k

Hi, yes, but if know what is the full name for padj...just like false discovery rate for FDR.

ADD REPLYlink written 25 days ago by mxlsherry199230
1

He just told you, adjusted p-value.

ADD REPLYlink written 25 days ago by Joe14k
1
gravatar for Brice Sarver
25 days ago by
Brice Sarver3.2k
United States
Brice Sarver3.2k wrote:

A quick Google search finds this post, which outlines it pretty clearly.

Specifically, it looks like the function is calling p.adjust() with method = "BH".

EDIT: I thought you wanted more info than what ATpoint provided, but I think they've answered your question...

ADD COMMENTlink modified 25 days ago • written 25 days ago by Brice Sarver3.2k
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