Entering edit mode

3.4 years ago

mxlsherry1992
▴
70

Hi all, if you know the full name of `padj`

in DESeq2? I know if it corrected p-value, but It should be the abbreviation, so if you know the full name for that?

Hi, yes, but if know what is the full name for

`padj`

...just like`false discovery rate`

for`FDR`

.He just told you,

`adjusted p-value`

.http://bioconductor.org/packages/devel/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#p-values-and-adjusted-p-values

Note that the results function automatically performs independent filtering based on the mean of normalized counts for each gene, optimizing the number of genes which will have an adjusted p value below a given FDR cutoff, alpha. Independent filtering is further discussed below. By default the argument alpha is set to 0.1. If the adjusted p value cutoff will be a value other than 0.1, alpha should be set to that value