Question: Michigan Imputation Server removed low call rate SNPs
15 months ago by
Shicheng Guo • 8.5k
Shicheng Guo • 8.5k wrote:
I notice Michigan Imputation Server removed all the low call rate SNPs (rate<90%??) before the imputation and phasing. Is there any way to remove this criterion?
contains invalid alleles duplicates indels monomorphic sites allele mismatch between reference panel and uploaded data SNP call rate < 90%
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