Frontmost snp callers for plant genomes
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2.8 years ago
Denis ▴ 230

Hello! I'm working with WGS data and looking for the most used software to find high quality SNPs and INDELs in plants with different ploidy levels. I've found two related posts, but seems they both already not up to date and futhermore not focused on plant genomes:

A: Snp Calling Tools And Costs
Variant Caller Of Choice?

Could you help me please?

alignment next-gen SNP genome • 375 views
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Pro-tip: You can paste links for biostars threads in your posts. Biostars code will automatically convert them to links with names (as you see above).

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2.8 years ago
JC 13k

For plants and other polyploid organism I prefer FreeBayes

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