Question: (Closed) Data format for wcgna algorithm in R
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ghataksoumyakanti • 0 wrote:
Hi guys I have four gse microarray datasets from which i have found out the differentially expressed genes for each data set seperately in a csv file format .now i want to do a weighted gene coexpression analysis on that data together.shud i merge the 4 deg list and input them into R or do i need to perform any other process to get my input data ready kindly help...my doubt is is it enough to enter data in same format as we found in deg analysis in R for furthur wgcna analysis
Hello ghataksoumyakanti!
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Sir, my primary doubt is still not solved and also after normalising the matrix my doubt is not solved
You should go through the tutorial for WGCNA, first, and then you will understand better how to use it.