Question: Which is the best r package for co expression analysis
0
gravatar for ghataksoumyakanti
3 months ago by
ghataksoumyakanti0 wrote:

Hi guys,I am doing microarray analysis on microarray data fr prostate cancer.which is the best r tool for gene coexpression anlysis...WGCNA,PETAL OR CEMITOOLS OR COEXNET....can someone tell their pros and cons or atleast send an article link which compared these

R gene • 152 views
ADD COMMENTlink written 3 months ago by ghataksoumyakanti0
1

What have you found when trying to find some answers yourself? If you ask us to search for literature, why don't you do that yourself?

ADD REPLYlink written 3 months ago by WouterDeCoster43k

No literature wise I have read...I am asking if someone has experienced a better outcome and better data after using one of these that distinguisges from other tools.

ADD REPLYlink modified 3 months ago • written 3 months ago by ghataksoumyakanti0
0
gravatar for Kevin Blighe
3 months ago by
Kevin Blighe55k
Porto Alegre / London
Kevin Blighe55k wrote:

If you want a ready-made tutorial, then try this one by me: Network plot from expression data in R using igraph

WGCNA is very popular, but you seem to be struggling with the tutorial?

Please read this: Gene co-expression analysis for functional classification and gene-disease predictions.

ADD COMMENTlink modified 3 months ago • written 3 months ago by Kevin Blighe55k
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