Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In
Question: Get SVG image of motif
0
gravatar for chtrgswm
8 months ago by
chtrgswm • 10
chtrgswm • 10 wrote:

How to get an SVG image of single motif, if I have the motif name and consensus sequence? I have tried Meme suit but it allows on png and eps format.
rna-seq sequence genome • 242 views
ADD COMMENT • link •
modified 8 months ago • written 8 months ago by chtrgswm • 10

Thank you. Converting the eps format works well.

ADD REPLY • link written 8 months ago by chtrgswm • 10
2
gravatar for Alex Reynolds
8 months ago by
Alex Reynolds ♦ 30k
Seattle, WA USA
Alex Reynolds ♦ 30k wrote:

You could perhaps use Inkscape to import EPS and export SVG: https://inkscape.org/learn/faq/#what-formats-can-inkscape-importexport
ADD COMMENT • link written 8 months ago by Alex Reynolds ♦ 30k
2
gravatar for Mensur Dlakic
8 months ago by
Mensur Dlakic • 5.7k
USA
Mensur Dlakic • 5.7k wrote:

Converting between vector formats is usually not a problem. There is an online converter that will do most common conversions:

https://onlineconvertfree.com/

If you already have .EPS files:

https://onlineconvertfree.com/convert-format/eps-to-svg/
ADD COMMENT • link written 8 months ago by Mensur Dlakic • 5.7k
0
gravatar for patelk26
8 months ago by
patelk26 • 120
patelk26 • 120 wrote:

Since you know the motif name, you could search for it in JASPAR (http://jaspar.genereg.net). JASPAR allows you to download SVG image for a motif.

ADD COMMENT • link written 8 months ago by patelk26 • 120

True, but only if it is not a de novo motif from MEME or Homer ;-)

ADD REPLY • link written 8 months ago by ATpoint ♦ 36k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1736 users visited in the last hour