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Question: Get SVG image of motif
0
gravatar for chtrgswm
14 months ago by
chtrgswm • 20
chtrgswm • 20 wrote:

How to get an SVG image of single motif, if I have the motif name and consensus sequence? I have tried Meme suit but it allows on png and eps format.
rna-seq sequence genome • 345 views
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modified 14 months ago • written 14 months ago by chtrgswm • 20

Thank you. Converting the eps format works well.

ADD REPLY • link written 14 months ago by chtrgswm • 20
2
gravatar for Alex Reynolds
14 months ago by
Alex Reynolds ♦ 31k
Seattle, WA USA
Alex Reynolds ♦ 31k wrote:

You could perhaps use Inkscape to import EPS and export SVG: https://inkscape.org/learn/faq/#what-formats-can-inkscape-importexport
ADD COMMENT • link written 14 months ago by Alex Reynolds ♦ 31k
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gravatar for Mensur Dlakic
14 months ago by
Mensur Dlakic • 8.3k
USA
Mensur Dlakic • 8.3k wrote:

Converting between vector formats is usually not a problem. There is an online converter that will do most common conversions:

https://onlineconvertfree.com/

If you already have .EPS files:

https://onlineconvertfree.com/convert-format/eps-to-svg/
ADD COMMENT • link written 14 months ago by Mensur Dlakic • 8.3k
0
gravatar for patelk26
14 months ago by
patelk26 • 140
patelk26 • 140 wrote:

Since you know the motif name, you could search for it in JASPAR (http://jaspar.genereg.net). JASPAR allows you to download SVG image for a motif.

ADD COMMENT • link written 14 months ago by patelk26 • 140

True, but only if it is not a de novo motif from MEME or Homer ;-)

ADD REPLY • link written 14 months ago by ATpoint ♦ 44k
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