Question: Get SVG image of motif
0
gravatar for chtrgswm
8 months ago by
chtrgswm10
chtrgswm10 wrote:

How to get an SVG image of single motif, if I have the motif name and consensus sequence? I have tried Meme suit but it allows on png and eps format.

rna-seq sequence genome • 242 views
ADD COMMENTlink modified 8 months ago • written 8 months ago by chtrgswm10

Thank you. Converting the eps format works well.

ADD REPLYlink written 8 months ago by chtrgswm10
2
gravatar for Alex Reynolds
8 months ago by
Alex Reynolds30k
Seattle, WA USA
Alex Reynolds30k wrote:

You could perhaps use Inkscape to import EPS and export SVG: https://inkscape.org/learn/faq/#what-formats-can-inkscape-importexport

ADD COMMENTlink written 8 months ago by Alex Reynolds30k
2
gravatar for Mensur Dlakic
8 months ago by
Mensur Dlakic5.7k
USA
Mensur Dlakic5.7k wrote:

Converting between vector formats is usually not a problem. There is an online converter that will do most common conversions:

https://onlineconvertfree.com/

If you already have .EPS files:

https://onlineconvertfree.com/convert-format/eps-to-svg/

ADD COMMENTlink written 8 months ago by Mensur Dlakic5.7k
0
gravatar for patelk26
8 months ago by
patelk26120
patelk26120 wrote:

Since you know the motif name, you could search for it in JASPAR (http://jaspar.genereg.net). JASPAR allows you to download SVG image for a motif.

ADD COMMENTlink written 8 months ago by patelk26120

True, but only if it is not a de novo motif from MEME or Homer ;-)

ADD REPLYlink written 8 months ago by ATpoint36k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1736 users visited in the last hour