I have a vcf file (SNP data) of 157 a cereal crop individuals. I have extracted only SNPs in chromosome 9 as the following:
vcftools --vcf file.vcf --chr chr09 --recode --recode-INFO-all --out chr9_output
I am interested in getting a subset of VCF files in a window 10 Mbp from chromosome 9 vcf file. Is this possible?