I got a raw data generated from Ion Torrent (Ion PGM) for sequencing virus species. The raw data in FastaQ format . Format of FastaQ tells you information about the reads. Normally, the first line tells you type of the reads (Is it single-end reads or paired-end reads).
My raw data has no information if the reads single-end reads or paired-end reads. I tried to contact owner of the raw data but I failed. My question is how do I know types of the reads?. Is there any tool can help me to know is the reads single-end reads or paired-end reads?. Is there something wrong during the sequencing?.
Thanks in advance for your help.