Entering edit mode
4.4 years ago
epifaniarango
•
0
Hi!
I am having big issues with my vcf files. Some of the SNPs are no variable but instead of having 'N' as value for missing data, my files have a '.' which doesn't allow me to run Beagle. Do you know an easy way to change the missing reference allele to 'N'? Thank you so much for your help
=)
Did you try anything like simple text manipulation with
awk?