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• Converting scRNA-Seq to Bulk-RNASeq
  for the initial analysis of our data set we would like to convert our single-cell RNA-Seq into Bu...
• Is Pseudotime analysis most applicable to time-series experiments?
  Hi, This is a theoretical question. Is pseudotime analysis generally applied to time-series type...
• How to get Mfuzz cluster information in Mfuzzgui?
   I 'm using Mfuzz package-Mfuzzgui to analyze my transcritome data, but I'm confussed about how t...
• Access to analysis to GEO dataset
  I need the dataset GSE14098 for my project. I could access the database and analyzed it with GEO2...
• Power Analysis In Multilevel Models
  Hi I am performing a series of multilevel models that are investigating an association between g...
• Using DESeq2 for time-series analysis
  I was wondering if I understood the `DESeq2` time-series vignette correctly. My data set contains...
• Deseq2: Time series experiment with 2 conditions and 5 time points
  Hi all, I have done a time series analysis using the steps outlined below and I got differential...
• Variance decomposition analysis (solved)
  I'm doing biological gene expression data. For the genes I analysed, each gene can produce two is...
• Conditions for predicting functional similarities based on gene expression time series plots?
  Conditions for predicting functional similarities based on gene expression time series plots? I...
• Time series analysis from ChIP-Seq data
  Hi, I was wondering if there a way to run a time series analysis on ChIP-Seq data. We have dupl...
• Detecting Biomarkers from Time Series Gene Epression data
  Hello, I have analyzed Time series Gene Expression Data and done following analysis: 1. Found D...
• Which types of DEGs should be chosen for "Short Time-series Expression Miner (STEM)"
  I hava five states transcriptome data,1 control, and 4 time-coursed treatment. I want to do the t...
• Time series data alignment
  I want to use dynamic time warping to align my time-series dataset. Are there any user friendly ...
• running mfuzz on multiple data sets
  Hi all,   I am working on a RNA-Seq data set from Drosophila Mel. I have 10x3 replicates of 12 d...
• GO enrichment analysis in R on Solanum lycopersicum proteomics dataset
  Hello people! I am analyzing a proteomic dataset of Solanum lycopersicum that is organized as fo...
• what does negative value mean in gene expression profile?
  hi, I would like to use data series in GEO by GSE71120. In this dataset in addition raw data(SR...
• survival analysis using R
  mrna_grade_surv<-coxph(Surv(Survival,Vital_status)~Grades,conf.type="none") Error in S...