Hide small indels from PacBio long read sequencing on IGV

Question

[jan]

Hi,

I'm trying to view structural variants (>50bp) from PacBio long read sequencing on IGV. I have been unable to hide the small indels (likely errors) using these settings:

∗ Alignment Track Options: Hide indels < 10 bases ∗ Coverage Track Options: Coverage allele-fraction threshold: 0.25 ∗ Tick: Quick consensus mode ∗ Press OK

Any suggestion to improve visualization of PacBio sequencing on IGV?

I'm using IGV 2.7.2

https://ibb.co/Wtm8BBG

[WouterDeCoster]

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