Question: Is there a database with calculated Ka/Ks ratios for human/mouse genomes?
0
gravatar for little_more
11 months ago by
little_more40
little_more40 wrote:

The header pretty much sums up my question. I need (somehow calculated) Ka/Ks ratios for human/mouse genomes. Is there any database with calculated ratios for each ortholog? Otherwise, maybe someone knows an article with a table where the ratios for all orthologs are listed? Or do I need to collect the ratios from a few articles or calculate them myself?

evolution database • 244 views
ADD COMMENTlink modified 11 months ago • written 11 months ago by little_more40
2
gravatar for microfuge
11 months ago by
microfuge1.8k
microfuge1.8k wrote:

Ensembl biomart proivides the list. https://www.ensembl.org/info/data/biomart/index.html

ADD COMMENTlink written 11 months ago by microfuge1.8k

But BioMart provides only a list of orthologs and not pre-calculated Ka/Ks ratios, doesn't it?

ADD REPLYlink written 11 months ago by little_more40
2

It does provides ka/ks values in Attribute -> Homologous (radio button) -> Orthologs -> scroll down to locate species (mouse) -> radio buttons (dn with mouse and ds with mouse)

ADD REPLYlink written 11 months ago by microfuge1.8k

Yes, I've already found it.

Thank you very much!

ADD REPLYlink written 11 months ago by little_more40
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