Question: Update list of asseccion numbers
gravatar for hazirliver
10 months ago by
hazirliver10 wrote:

Hello! I have a list with accession numbers, but some of the numbers on this list are out of date (they are "old version"). Are there any easy ways (using biopython or ready-made scripts) to update this list?

ADD COMMENTlink modified 8 months ago by Biostar ♦♦ 20 • written 10 months ago by hazirliver10

There are a few posts about update of accession numbers in Biostar database,

I found some, but you may continue the search if it's not enough to you.

Go to the upper left corner of the page, press 'LATEST' and type your question:

'update of accession number'. In case there is no answer, replace your question to a few key words.

Also look at the right panel of any post you have opened (even of your own question) - you

may find some additional useful posts there.

A: GeneBank accession 2 Entrez gene id

The sequence changes with the refseq version

Update Biopython'S Seqrecords?

Do fasta files at ftp.ncbi ever change once uploaded?

Fetching Genbank Entries For List Of Accession Numbers.

ADD REPLYlink modified 10 months ago • written 10 months ago by natasha.sernova3.7k

Thank you! I will try to find the answer there

ADD REPLYlink written 10 months ago by hazirliver10
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