Question: Update list of asseccion numbers
gravatar for hazirliver
8 weeks ago by
hazirliver0 wrote:

Hello! I have a list with accession numbers, but some of the numbers on this list are out of date (they are "old version"). Are there any easy ways (using biopython or ready-made scripts) to update this list?

ADD COMMENTlink modified 11 days ago by Biostar ♦♦ 20 • written 8 weeks ago by hazirliver0

There are a few posts about update of accession numbers in Biostar database,

I found some, but you may continue the search if it's not enough to you.

Go to the upper left corner of the page, press 'LATEST' and type your question:

'update of accession number'. In case there is no answer, replace your question to a few key words.

Also look at the right panel of any post you have opened (even of your own question) - you

may find some additional useful posts there.

A: GeneBank accession 2 Entrez gene id

The sequence changes with the refseq version

Update Biopython'S Seqrecords?

Do fasta files at ftp.ncbi ever change once uploaded?

Fetching Genbank Entries For List Of Accession Numbers.

ADD REPLYlink modified 8 weeks ago • written 8 weeks ago by natasha.sernova3.7k

Thank you! I will try to find the answer there

ADD REPLYlink written 8 weeks ago by hazirliver0
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