convert it to a fasta file?

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4.4 years ago

wngusgus1004 • 0

Can the file from the link below be converted to a file that can be used with igv, such as fasta or fastaq?

sequencing RNA-Seq ChIP-Seq next-gen • 1.3k views

ADD COMMENT • link 4.4 years ago by wngusgus1004 • 0

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ADD REPLY • link 4.4 years ago by cpad0112 21k

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need it for methylation analysis.

ADD REPLY • link 4.4 years ago by wngusgus1004 • 0

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On a cursory look, it seems the DMRcate BioConductor package can convert the array data to bedGraph, which then can be visualized in IGV.

ADD REPLY • link 4.4 years ago by h.mon 35k

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Thanks for the info. What file type or format should I use to use DMRcate?

ADD REPLY • link 4.4 years ago by wngusgus1004 • 0

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I had only a cursory look at DMRcate, I never used it. I am afraid you will have to read the documentation and figure out by yourself.

ADD REPLY • link 4.4 years ago by h.mon 35k

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