Creating a marker file for copy number analysis
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4.4 years ago
zizigolu ★ 4.3k

Hi

I have a markers file contains snp position across the genome like below

Marker     chr  position
rs62635286  1   13116
rs75454623  1   14930
rs806731    1   30923
rs200943160 1   49298
rs116400033 1   51479
rs141149254 1   54490
rs28396308  1   55545
rs114420996 1   58814
rs62637817  1   60351

How I can divide the genome into 10 kb bins, so the markers file contains the start and stop positions for each of these 10kb segments for each chromosome?

r genomics bash • 661 views
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