not able to run Fastqc in Centos server

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4.4 years ago

sunnykevin97 ▴ 980

Hello

Unable to open fastqc in server, Showing Java error, i do have java 1.8 in the server and export the path as well. need help.

CMD - I logined using ssh -X lls@18.34.20.

./fastqc 
Exception in thread "main" java.awt.AWTError: Assistive Technology not found: org.GNOME.Accessibility.AtkWrapper
    at java.awt.Toolkit.loadAssistiveTechnologies(Toolkit.java:807)
    at java.awt.Toolkit.getDefaultToolkit(Toolkit.java:886)
    at javax.swing.UIManager.getSystemLookAndFeelClassName(UIManager.java:611)
    at uk.ac.babraham.FastQC.FastQCApplication.main(FastQCApplication.java:322)

fastqc genomics • 1.8k views

ADD COMMENT • link updated 3.2 years ago by Biostar 20 • written 4.4 years ago by sunnykevin97 ▴ 980

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See if this solution helps (look for Max Medina's answer): https://github.com/microsoft/vscode-arduino/issues/644

ADD REPLY • link 4.4 years ago by GenoMax 141k

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just use the full command line instead of invoking the (default) gui ?

ADD REPLY • link 4.4 years ago by Pierre Lindenbaum 161k

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