What should I provide as input for Tomtom: PPMs or PWMs?
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19 months ago
chipolino ▴ 80

Hi,

I am sorry if it's a silly question. Does it make any difference if I (when using Tomtom) provide as input PPMs in meme format and not PWMs (DNA motifs)? My expectation is that it should not matter that much, especially if I expect uniform distribution of nucleotides, but I might be wrong here.

Thanks.

motif tomtom meme • 340 views
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