Question: Explanation for SNP data and its relativeness to the allele frequency
0
gravatar for albertoogy
12 months ago by
albertoogy0
albertoogy0 wrote:

Can anyone explain how to calculate the allele frequency of an SNP marker with description: SNP 1 Row Mapping Format: "0" = Reference allele homozygote, "1" = SNP allele homozygote, "2"= heterozygote and "-" = double null/null allele homozygote (absence of fragment with SNP in genomic representation).

And I would be glad if someone explain how to calculate the minor and major allele frequencies a marker and how to calculate with these 1,0 and 2. I searched on many and each and every formula written in the R-program code is different. I am using DArTSeq genotyping. Help me please ??

sequencing snp next-gen R genome • 301 views
ADD COMMENTlink modified 12 months ago by Joe18k • written 12 months ago by albertoogy0
1

This is not a Tutorial post. Tutorials are for those offering them, not requesting them.

I have amended the post this time, but please bear in mind for the future.

ADD REPLYlink written 12 months ago by Joe18k
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2136 users visited in the last hour