Question: (Closed) how can i change any drug format to pdb format?
0
gravatar for ali.kian.saei
11 months ago by
ali.kian.saei10 wrote:

i want to change txt format of my drug to pdb format

i cant download pdb format of drug in drugbank

protein drug • 306 views
ADD COMMENTlink written 11 months ago by ali.kian.saei10

Hello ali.kian.saei!

Not enough detail, unanswerable in its current form. Please edit to include more detail so the question can actually be dealth with and the post will be reopened.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink modified 11 months ago • written 11 months ago by Joe18k

Dear ali, if you are downloadling your drug file from drug bank, there is an option for downloading in pdb format

Have a look at the link provided below

https://www.drugbank.ca/drugs/DB00497

If you click on download option in structure section, there is an option for saving your file in pdb format

Hope this helps!!

ADD REPLYlink modified 11 months ago • written 11 months ago by Manoj180

hi yes i know that but in this way i have to download each drug one by one

i try to find a way to download all of drugs in pdb format at once

ADD REPLYlink written 11 months ago by ali.kian.saei10

May i know in which file format you can download all drugs. If you can download in SDF or similar file format, split each file using simple PERL or any language script. You can easily do that because if all drug comes in one single file there must demarcation between each drug. Once you have all the single drug files, use openbabel tool to convert them in pdb file format using command line. Hope this helps!!!

ADD REPLYlink written 10 months ago by Manoj180
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