i want to change txt format of my drug to pdb format
i cant download pdb format of drug in drugbank
Not enough detail, unanswerable in its current form. Please edit to include more detail so the question can actually be dealth with and the post will be reopened.
For this reason we have closed your question. This allows us to keep the site focused
on the topics that the community can help with.
If you disagree please tell us why in a reply below, we'll be happy to talk about it.
if you are downloadling your drug file from drug bank, there is an option for downloading in pdb format
Have a look at the link provided below
If you click on download option in structure section, there is an option for saving your file in pdb format
Hope this helps!!
yes i know that but in this way i have to download each drug one by one
i try to find a way to download all of drugs in pdb format at once
May i know in which file format you can download all drugs.
If you can download in SDF or similar file format, split each file using simple PERL or any language script. You can easily do that because if all drug comes in one single file there must demarcation between each drug.
Once you have all the single drug files, use openbabel tool to convert them in pdb file format using command line.
Hope this helps!!!