Question: Retrieve the aa sequence for a given IMG gene ID
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gravatar for adai
5 days ago by
adai10
adai10 wrote:

Hi,

I have like 2000+ IMG(https://img.jgi.doe.gov/) gene IDs, for example, 637038738, and I would like to get the aa sequence of that gene. I have searched for hours but couldn't find a way to do that automatically.

I don't need to the whole organism genome so the API (https://genome.jgi.doe.gov/portal/help/download.jsf)wouldn't help.

I was wondering if anyone have any insights or suggestions?

Thank you very much

Angel

ADD COMMENTlink modified 4 days ago • written 5 days ago by adai10
0
gravatar for adai
4 days ago by
adai10
adai10 wrote:

For anyone who's wondering: here's the solution from Amy Chen from the IMG: (I clicked the "contact us" button)

After you select and add 2000+ genes into gene cart, click "Select All" button, then go to the "Upload & Export & Save" tab to find the export function. In the "Export Genes" section, select "FASTA Amino Acid format" and click "Show in Export Format"

I've tried and this works!

Angel

ADD COMMENTlink written 4 days ago by adai10
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