What is configuration required for exome sequence analysis?
0
0
Entering edit mode
4.4 years ago
Karma ▴ 310

I have about 40 exomes to be analyzed to call the variants. What should be the best system configuration to get these results in the fastest way

next-gen rna-seq configuration • 693 views
ADD COMMENT
0
Entering edit mode

40x 144-core Skylake nodes with 1.5TB each so you can do everything in memory and everything in parallel.

Ok, now seriously: What is your budget, that is important to know first. Beyond that and normal server node would do, nothing special with exomes.

ADD REPLY
0
Entering edit mode

I have a system with following configuration

Architecture:          x86_64
CPU op-mode(s):        32-bit, 64-bit
CPU(s):                16
Thread(s) per core:    1
Core(s) per socket:    8
CPU socket(s):         2
NUMA node(s):          2
Vendor ID:             GenuineIntel
CPU family:            6
Model:                 45
Stepping:              7
CPU MHz:               2599.807
Virtualization:        VT-x
L1d cache:             32K
L1i cache:             32K
L2 cache:              256K
L3 cache:              20480K

And

10TB Harddrive
64 GB RAM

Is there any difference in using the system as GUI from server mode (only terminal)?. I have Ubuntu 18.04 Desktop as well as server mode Operating system (OS). Will using GUI based OS slowdown the process?

ADD REPLY

Login before adding your answer.

Traffic: 3198 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6