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• gff3 to gtf conversion
  I need to convert .gff3 to .gtf file. Any suggestions on how to do it? I tried gffread and got an...
• Conversion GFF to GTF for specific non-model genome
  Hi @ll! I am working with a recently sequenced genome of a non-model system, which is this one: ...
• gffread conversion leaves gene_id
  Hi, I am trying to get a gtf from gff. I used the following code format gffread example.gff -T ...
• Converting GTF file to UCSC-styled bed file
  Hello, I have a gff file and I wnt to convert it to UCSC styled bed file ( tab separated, 12-col...
• GFF/GTF for small ncRNAs
  Hi, Is there a gtf/gff file for human small non-coding RNAs? (preferably Ensembl) Thanks
• Ncbi Xml To Gff/Gtf
  I started with: ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/ASN_BINARY/Mammalia/Sus_scrofa.ags.gz and ...
• gffread query for gff to gtf conversion
  Hi, I was just wondering if one can explain to me what is happening with the tool gffread while ...
• What is the difference between GTF AND GFF format
  What is the difference between GTF AND GFF annotation format and which one should I use to run To...
• RNA-Seq And Genome Annotation file (GFF/GTF)
  Whats approaches can be done to find DEGs for species whose GTF/GFF file is not reported yet?
• Gff (Or Gtf) To Psl
  Hi, How to convert a gff file to a psl file ? thanks, N.
• Convert bed12 to GFF
  There are several posts online about converting a GFF/GTF to BED12 but is there any way to go the...
• Convertion Of Gff3 To Gtf
  How do I convert GFF file to a GTF file? Is there any tool available ?    
• converting .gff file to .gtf
  I am trying to upload annotation file to the galaxy rna seq work flow, but i have annotation in t...
• How to run a Perl script
  Hello, I do not have any experience in Perl scripting. I have a Perl script that is specifically...
• Creation Of Exoncountset In Dexseq
  Hi, I am using DEXSeq for differential exon usage tests. In the vignette of producing ExonCountS...