Question: From where to get Sub-telomeric Region Coordinates/ sequences for each chromosome
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gravatar for rohitsatyam102
7 months ago by
rohitsatyam102120 wrote:

Hi All!!

I have searched a lot on how to fetch the subtelomeric region sequences chromosome wise. However I am unable to do that. Does someone have some experience doing that. I referred to this paper Mapping and Initial Analysis of Human Subtelomeric Sequence Assemblies https://www.ncbi.nlm.nih.gov/pmc/articles/PMC314271/

However the following link from abovementioned paper https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM1958562 gives me SRR files which on dumping gives me the following output

@100_1000_1001_F3

T12022113211332310212120210000333321311203201121301

+100_1000_1001_F3

!@<@82?@>@@@@>@?@@@@@@@=@@@?/@=@@@@@@@@@@@?<@@2@@@@

This is unusual.

I used the following command:

fastq-dump --outdir fastq --gzip --skip-technical  --origfmt --dumpcs --readids --read-filter pass --dumpbase --split-3 --clip SRR_ID
assembly chip-seq gene genome • 165 views
ADD COMMENTlink written 7 months ago by rohitsatyam102120
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