Question: Well studied gene networks/pathways in rice
gravatar for zhang.jianhai
7 weeks ago by
zhang.jianhai0 wrote:


I need well-studied rice networks/pathways to test networks constructed using my own method, i.e. use the well-studies networks to do enrichment on my own networks. Except for KEGG, Mapman, what other resources are recommended?


rice pathway • 127 views
ADD COMMENTlink modified 7 weeks ago • written 7 weeks ago by zhang.jianhai0

Hi Zhang,

what are you looking for is not clear at all. What kind of data did you use to build your network? How did you built your network?

ADD REPLYlink written 7 weeks ago by andres.firrincieli370

Hi Andres,

I used rice RNA-seq data to build my own networks, and want to know how these networks are related to known/gold standard rice networks. Therefore, any known/gold standard rice networks/pathways are interesting to me such as the Flavonoid pathway, the more the better.

ADD REPLYlink written 7 weeks ago by zhang.jianhai0

Its actually not clear what kind of networks you are talking about. If its co-expression networks than this is a good resource where they have used RNA-seq data. There is another good resource but it is based on microarray data.

ADD REPLYlink written 7 weeks ago by ashish270

I am talking co-expression networks. Yes the two are good resources. Thank you!

ADD REPLYlink written 6 weeks ago by zhang.jianhai0
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