Question: Well studied gene networks/pathways in rice
0
gravatar for zhang.jianhai
10 months ago by
zhang.jianhai0 wrote:

Hello,

I need well-studied rice networks/pathways to test networks constructed using my own method, i.e. use the well-studies networks to do enrichment on my own networks. Except for KEGG, Mapman, what other resources are recommended?

Regards.

rice pathway • 237 views
ADD COMMENTlink modified 10 months ago • written 10 months ago by zhang.jianhai0

Hi Zhang,

what are you looking for is not clear at all. What kind of data did you use to build your network? How did you built your network?

ADD REPLYlink written 10 months ago by andres.firrincieli950

Hi Andres,

I used rice RNA-seq data to build my own networks, and want to know how these networks are related to known/gold standard rice networks. Therefore, any known/gold standard rice networks/pathways are interesting to me such as the Flavonoid pathway, the more the better.

ADD REPLYlink written 10 months ago by zhang.jianhai0
1

Its actually not clear what kind of networks you are talking about. If its co-expression networks than this is a good resource where they have used RNA-seq data. There is another good resource but it is based on microarray data.

ADD REPLYlink written 10 months ago by ashish540

I am talking co-expression networks. Yes the two are good resources. Thank you!

ADD REPLYlink written 10 months ago by zhang.jianhai0
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