Using VCF in SNPTESTv2.5.4beta3
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24 months ago
joshda • 0

Hi everyone,

I'm trying to run SNPTest using imputed data, however, MINIMAC4 only outputs in VCF and INFO files. I know I can make SNPTest run with VCF, but apparently, it still needs a SAMPLE file. I tried creating GEN and SAMPLE files from VCF, but they still did not work with SNPTest. Any ideas on what can be done?

Thank you in advance!

snptest VCF SAMPLE GEN INFO • 606 views
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