Question: Using VCF in SNPTESTv2.5.4beta3
gravatar for joshda
4 months ago by
joshda0 wrote:

Hi everyone,

I'm trying to run SNPTest using imputed data, however, MINIMAC4 only outputs in VCF and INFO files. I know I can make SNPTest run with VCF, but apparently, it still needs a SAMPLE file. I tried creating GEN and SAMPLE files from VCF, but they still did not work with SNPTest. Any ideas on what can be done?

Thank you in advance!

info snptest sample gen vcf • 143 views
ADD COMMENTlink modified 8 weeks ago by Biostar ♦♦ 20 • written 4 months ago by joshda0
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