How to determine haplotypes from variation graphs
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18 months ago

vg works quite well for calling variants. Is it possible to determine haplotypes from a variation graph using vg?

Thanks.

vg • 505 views
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17 months ago
glenn.hickey ▴ 240

This is a problem we're interested in, but there's nothing yet built into vg for doing this. I believe the whatshap devlopers (https://bitbucket.org/whatshap/whatshap/src/master/) have been working on vg support, but I do not know what state it's in currently.

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Alright thanks Glenn.

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