Question: How to determine haplotypes from variation graphs
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gravatar for twesigomwedavid
11 months ago by
twesigomwedavid0 wrote:

vg works quite well for calling variants. Is it possible to determine haplotypes from a variation graph using vg?

Thanks.

vg • 340 views
ADD COMMENTlink modified 10 months ago by glenn.hickey160 • written 11 months ago by twesigomwedavid0
2
gravatar for glenn.hickey
10 months ago by
glenn.hickey160
glenn.hickey160 wrote:

This is a problem we're interested in, but there's nothing yet built into vg for doing this. I believe the whatshap devlopers (https://bitbucket.org/whatshap/whatshap/src/master/) have been working on vg support, but I do not know what state it's in currently.

ADD COMMENTlink written 10 months ago by glenn.hickey160

Alright thanks Glenn.

ADD REPLYlink written 9 months ago by twesigomwedavid0
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