Hi everyone, I' m trying to convert sra file from ncbi to bam with this command:
sam-dump SRRfile | samtools view -bS - > SRRfile.bam
and I get this error :
2019-12-06T10:22:54 sam-dump.2.9.0 int: transfer incomplete while reading file within network system module - VCursorCellDataDirect( row#56918017 . idx#6 . READ ) INSDC_dna_text (ptr) failed [W::sam_read1] Parse error at line 56918017 [main_samview] truncated file.
Does anyone know what is the problem here?Can someone help me? Thanks