Question: Where does Prokka take EC numbers from?
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gravatar for zuzanna.karwowska
6 weeks ago by
zuzanna.karwowska0 wrote:

Hi guys, do you know based on which database does prokka assign EC numbers to found proteins? KEGG or NCBI database or an internal db? thanks

annotation prokka ec number • 134 views
ADD COMMENTlink modified 6 weeks ago • written 6 weeks ago by zuzanna.karwowska0
0
gravatar for Mensur Dlakic
6 weeks ago by
Mensur Dlakic3.0k
USA
Mensur Dlakic3.0k wrote:

Prokka assigns all annotations by copying fasta headers from its internal database, or from HMM descriptions.

ADD COMMENTlink written 6 weeks ago by Mensur Dlakic3.0k
0
gravatar for zuzanna.karwowska
6 weeks ago by
zuzanna.karwowska0 wrote:

Thabk you, do you know if it is possible to dowload prokkas EC number database? For my research I need the exact number of all ec num ers in prokka database. Thanks!

ADD COMMENTlink written 6 weeks ago by zuzanna.karwowska0

The meaning of EC numbers is explained at ExPASy, specifically in this file. Prokka has all the files used for annotations in db/genus and db/kingdom directories.

ADD REPLYlink written 6 weeks ago by Mensur Dlakic3.0k
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