Question: Where does Prokka take EC numbers from?
gravatar for fyfes
9 months ago by
fyfes20 wrote:

Hi guys, do you know based on which database does prokka assign EC numbers to found proteins? KEGG or NCBI database or an internal db? thanks

annotation prokka ec number • 267 views
ADD COMMENTlink modified 9 months ago • written 9 months ago by fyfes20

Thabk you, do you know if it is possible to dowload prokkas EC number database? For my research I need the exact number of all ec num ers in prokka database. Thanks!

ADD REPLYlink written 9 months ago by fyfes20
gravatar for Mensur Dlakic
9 months ago by
Mensur Dlakic6.4k
Mensur Dlakic6.4k wrote:

Prokka assigns all annotations by copying fasta headers from its internal database, or from HMM descriptions.

The meaning of EC numbers is explained at ExPASy, specifically in this file. Prokka has all the files used for annotations in db/genus and db/kingdom directories.

ADD COMMENTlink modified 7 months ago by zx87549.6k • written 9 months ago by Mensur Dlakic6.4k
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