**0**wrote:

What is the content of Chicdiff::chicdiffPipeline() output from *_results.Rmd? I am currently following a tutorial on differential interaction calling (https://github.com/RegulatoryGenomicsGroup/chicdiff) and The column names of this output are the following:

[1] group

[2] baseMean

[3] log2FoldChange

[4] lfcSE

[5] stat

[6] pvalue

[7] padj

[8] baitID

[9] maxOE

[10] minOE

[11] regionID

[12] OEchr

[13] OEstart

[14] OEend

[15] baitchr

[16] baitstart

[17] baitend

[18] avDist

[19] uniform

[20] shuff

[21] avgLogDist

[22] avWeights

[23] weight

[24] weighted_pvalue

[25] weighted_padj

I assume that:

- columns 2-7 are from DESeq2 output.

- columns 8-17 describe bait and other end coordinates/IDs

However, I have trouble guessing what do **column 1** and **columns 18-25** mean. It looks like groups in column 1 are divided, based on 'avDist', and I guess the columns 18-25 has to do with how the p values are adjusted, taking into account the distance, but is there any more descriptive description of these columns?

**20**• written 13 months ago by adrija.kalvisa •

**0**