How to distinguish reads with unique SNPs?
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16 months ago
Andrew Liu ▴ 10

I'm now working on identifying mutation sites of C. elegans. And I'm using tools adapted from Galaxy. I'm wondering after crossing N2 background worms with Hawaiian worms, how could I distinguish certain read is from N2 worm or Hawaiian worm with SNP sites? I want some tools or methods described. Thanks a lot!

WGS genetics • 259 views
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Were these samples indexed? If so you should be able to identify which sample the read originated from by looking at its fastq header.

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