I'm diving in this world now (so I'm a newbie) and I have a big issue to resolve. I need the FastQ file of each bovine (Bos taurus taurus) chromosome. In NCBI I can only download each FastA file splitted by chromosome and I don't know other database with this especific file. Two options comes to my mind:
1º - Convert the FastA to FastQ, but I read that some dates in the FastQ file doesn't exist in the FastA file and the sites and softwares can't convert my files because they are too heavy (about 100Mb).
2° - Download the SRA file from NCBI, convert to FastQ and than split (?) by chromosome, but how could I do it?
Regars from someone lost. =]