which ID of differentially expressed genes from the result page of the GEO2R is used to the construction of the Protein-Protein interaction network in the STRING database?
1
0
Entering edit mode
4.4 years ago
Sib ▴ 60

I performed a differential expression analysis by GEO2R and Now, I want to enter a list of differentially expressed genes to STRING database and construct a PPI network. STRING database accepts protein names as input. Can I use any ID between different IDs in the result page of GEO2R ( ID SPOT_ID, CONTROL_TYPE, REFSEQ, GB_ACC, GENE_SYMBOL, GENE_NAME, UNIGENE_ID, ENSEMBL_ID, ACCESSION_STRING, CYTOBAND DESCRIPTION, and GO_ID) if yes which one? Or I should select one of them and then convert to another format by converter tools?

gene • 1.1k views
ADD COMMENT
1
0
Entering edit mode

It accepts Proteins by Names / Identifiers.

ADD REPLY

Login before adding your answer.

Traffic: 1498 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6