Question: which ID of differentially expressed genes from the result page of the GEO2R is used to the construction of the Protein-Protein interaction network in the STRING database?
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gravatar for Sib
10 months ago by
Sib20
Sib20 wrote:

I performed a differential expression analysis by GEO2R and Now, I want to enter a list of differentially expressed genes to STRING database and construct a PPI network. STRING database accepts protein names as input. Can I use any ID between different IDs in the result page of GEO2R ( ID SPOT_ID, CONTROL_TYPE, REFSEQ, GB_ACC, GENE_SYMBOL, GENE_NAME, UNIGENE_ID, ENSEMBL_ID, ACCESSION_STRING, CYTOBAND DESCRIPTION, and GO_ID) if yes which one? Or I should select one of them and then convert to another format by converter tools?

gene • 287 views
ADD COMMENTlink modified 10 months ago • written 10 months ago by Sib20
1
gravatar for prince26121991
10 months ago by
prince2612199170 wrote:

Question: Which Ensembl protein id (ENSP) should I use? (Which id is used by string-db)

ADD COMMENTlink written 10 months ago by prince2612199170

It accepts Proteins by Names / Identifiers.

ADD REPLYlink written 10 months ago by Sib20
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