I want to analyse some time series data
I have been tried with galaxy but i think the tool is not useful enough.
So i want to get my count data into R studio and get my DEG from there. But i dont know what is the easiest and best package for that. I dont think this can be done with limma or Deseq2 or EdgeR. I did this with Deseq2 before, for example differentiated the time point 0 with time point 1 and then time point 0 with time point 2,
0 with 1 0 with 2 0 with 3 And so on.
But i think this is not the correct way.