Question

name of the figure

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4.4 years ago

yueli7 ▴ 250

Hello, Everyone,

Anyone know the name of the figure?

Thanks in advance for any help!

Best,

Yue

Screenshot-from-2019-12-12-15-56-59

RNA-Seq • 895 views

ADD COMMENT • link updated 4.4 years ago by A. Domingues ★ 2.7k • written 4.4 years ago by yueli7 ▴ 250

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Based on the information provided, it is either Figure 3. or Screenshot-from-2019-12-12-15-56-59. I may have a better suggestion if you provide more information.

ADD REPLY • link 4.4 years ago by Mensur Dlakic ★ 27k

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Clonal architecture plots for a tumor are also represented in this way. See SciClone paper as an example.

ADD REPLY • link 4.4 years ago by GenoMax 141k

score 2 · Answer 1 · 2019-12-13

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4.4 years ago

A. Domingues ★ 2.7k

It looks like a fancy Sankey or alluvial diagram. This would be a more typical example:

And there is another in here: https://bioconductor.org/packages/release/bioc/vignettes/Director/inst/doc/vignette.pdf

ADD COMMENT • link 4.4 years ago by A. Domingues ★ 2.7k

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Alluvial diagrams are a form of parallel coordinates diagram. You can plot them in R with the alluvial package or the ggalluvial extension of ggplot2.

ADD REPLY • link 4.4 years ago by Jean-Karim Heriche 27k

score 0 · Answer 2 · 2019-12-12

To me it looks like overlapping horizontal violin plots, that have been smoothed at the edges. This could be a design that Guardant360 came up with (the legend mentions that the figures were generated by Guardant360). Here is an example of a horizontal violin plot. You can read more about violin plots here - https://en.wikipedia.org/wiki/Violin_plot