Question: Phylogenetic tree with OrthoFinder-inferred orthogroups as leaves
0
gravatar for fefe
5 months ago by
fefe0
fefe0 wrote:

Dear all,

I've run OrthoFinder with a list of 15 animal proteomes and I got the inferred orthogroups and the relative trees. The results look good but I would like to obtain further information regarding the relationships between the orthogroups. So I thought to cluster the orthogroups between them and produce a bigger tree with, as leaves, the inferred orthogroups. I tried using Clustal Omega on the sequences from a group of orthogroups of interest, but some of the relationships inferred by OrthoFinder were lost. Any suggestions on how I can do this?

Thank you in advance for you time and consideration.

tree orthogroups orthofinder • 122 views
ADD COMMENTlink written 5 months ago by fefe0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1421 users visited in the last hour