Question: Download pnly latest sequences from GenBank
0
gravatar for aquaq
10 months ago by
aquaq30
aquaq30 wrote:

Hi All,

I am developing a webserver that would run a pipeline at every update of GenBank. After every update, I would like to download only those sequences that were added during the last update. Is it possible to do programatically without downloading the whole database? If yes, how?

Thank you for any advice!

genbank • 208 views
ADD COMMENTlink modified 10 months ago by Xylanaser60 • written 10 months ago by aquaq30
2
gravatar for Xylanaser
10 months ago by
Xylanaser60
Poland - Warsaw - SGGW/WULS
Xylanaser60 wrote:

https://www.ncbi.nlm.nih.gov/books/NBK279680/

update_blastdb.pl

check last paragraph ;) best wishes

ADD COMMENTlink modified 10 months ago • written 10 months ago by Xylanaser60
1

Thank you, I would have never searched for this there :) You saved me a lot of time!

ADD REPLYlink written 10 months ago by aquaq30

If an answer was helpful, you should upvote it; if the answer resolved your question, you should mark it as accepted. You can accept more than one if they work.
Upvote|Bookmark|Accept

ADD REPLYlink written 10 months ago by genomax91k
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