bcftools filtering only 10% missing genotype

Question

[Sillpositive]

Hello everyone,

I would like to keep only 90% of my missing genotype on all my samples. I used this option of bcftools :

bcftools view -g ^miss  variants.vcf.gz -Oz -o filtered_variants.vcf.gz

When I use this option my variant it's deleted for all the samples. I know it's possible to use regular expressions in bcftools, but I'm a little confused.

Thank you very much.

[Emily]

I've edited your post to a Question. The post type Tool is to advertise a new tool, not to ask questions about using tools.

[Sillpositive]

Thank you Emily ! My mistake

Answer 1

[Pierre Lindenbaum]

bcftools view -i 'F_MISSING<0.1'  in.vcf